Untitled Document

CLONES

Background

Bacterial E. coli clones are widely used to isolate, sequence and characterise subsets of DNA and RNA sequences, and are especially useful for characterising complex genomes such as Brassica. A range of different classes of clones have been used to characterise Expressed Sequence Tages (ESTs), as well as for shotgun Genome Survey Sequencing (GSS) of Brassica. Longer insert clones, particularly those in Bacterial Artificial Chromosomes (BACs) have been an essential platform for large-scale genomic mapping and the ongoing sequencing project.

Information for this page is based on the information we have to date - please provide any updates by sending to Graham King

BAC clone summary

Species
Name
Crop type
Line
Vector
Laboratory
Clone number
Availability
BAC-end Seqs
Complete seqs
More info
napus
Lib 2

Winter rapeseed

Darmor-bzh
pIndigoBAC
INRA (Genoplante)
111,000
Boulos Chaloub
-
-
napus
Lib 1
Winter rapeseed
Darmor-bzh
pIndigoBAC
INRA (Genoplante)
73,000
Boulos Chaloub
-
-
napus
JBnB
rapeseed
Tapidor
 
JIC
89,444
JIC Genome Lab
yes
-
 
napus
JBnY
rapeseed
Tapidor
 
JIC
 
JIC Genome Lab
-
-
 
napus
 
 
DH12075
 
AAFC
 
Isobel Parkin
-
-
 
napus
 
 
 
 
China
80,000
 
-
-
 
oleracea
BoB
Kailaan
A12DHd
pBeloBAC
HRI / TAMU
 
Carol Ryder
-
-
 
oleracea
JBo
 
 
 
PBL / JIC
 
Ian Bancroft
-
-
oleracea
 
 
Early Big
 
UC Davis
18,000
Carlos Quiros
-
-
 
oleracea
 
 
T01434
 
U Georgia
73,000
Andy Paterson
yes
-
 
oleracea
 
 
Badger Inbred 16
 
U Georgia
18,000
Andy Paterson
-
-
 
rapa
KBrB
Chinese cabbage
Chiifu-401
 
CNU
 
Yong Pyo Lim
yes
yes
 
rapa
KBrE
 
 
 
Korea
23,040
Soo-Jin Kwon
yes
-
 
rapa
KBrH
Chinese cabbage
Chiifu-401
 
CNU
 
Yong Pyo Lim
yes
yes
 
rapa
KBrS
Chinese cabbage
Chiifu-401
 
CNU
 
Yong Pyo Lim
yes
yes
 
rapa
JBr
Y. Sarson
R-O-18
 
PBL / JIC
 
Ian Bancroft
-
-
juncea
 
 
 
 
 
 
 
 
 
 

 

Other BAC resources:

BACMan database (Plant Genome Mapping Lab at the University of Georgia )
JIC Genome Lab

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EST clone summary

(this table currently being updated, Jan 2009)

Species
Name
Plant line/crop
Tissue
Lab
Lisize
Contact
Number seqs
Refs
napus
 
Samouri
 
INRA/Genoplante
 
 
34,000
 
napus
 
DH12075
 
AAFC
 
 
2,993
 
napus
 
DH12075
 
AAFC
 
 
1,147
 
napus
 
DH12075
 
AAFC
 
 
125,000
 
napus
 
DH12075
 
NRC-PBI
 
 
144,581
 
napus
 
DH12075
 
NRC-PBI
 
 
11,924
 
napus
 
DH12075
 
NRC-PBI
 
 
44,414
 
napus
 
Express 617
young flowers & flower buds
U of Bielefeld
8,747
 
 
rapa
 
Chiifu-401
 
NIAB, Korea
 
 
130,000
 
rapa
 
 
 
AAFC
 
 
15,000
 
rapa
 
 
 
NRC-PBI
 
 
14,814
 
oleracea
 
A12DHd
 
AAFC/WHRI
 
 
18,679
 
oleracea
 
 
 
NRC-PBI
 
 
5,643
 
oleracea
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
juncea
 
 
 
 
 
 
 
 
carinata
 
 
 
NRC-PBI
 
 
5,600